SeqEM | Tool name | SeqEM |
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| URL | http://hihg.med.miami.edu/software-download/seqem-version-1.0 |
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| Important features | 1. SeqEM is a SNP calling algorithm for next generation sequencing data.
2. It uses EM algorithm for parameter estimation for next generation sequencing data of unrelated individual samples.
3. It can estimate error rate of the reads and frequency of genotypes.
4. It also helps in disease association studies by classification of genotypes. |
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| Citations | Martin ER, Kinnamon DD, Schmidt MA, Powell EH, Zuchner S, Morris RW. SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies. Bioinformatics. 2010 Nov 15;26(22):2803-10. Epub 2010 Sep 21. PubMed PMID:
20861027; PubMed Central PMCID: PMC2971572. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Function | SNP discovery |
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| Category | Free, Downloadable |
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| Maintained by | Hussman Institute for Human Genomics
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